Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013756.1 Corchorus olitorius cultivar O-4 contig13789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34453

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
220--259
18
2.2
18
86
0
53
25
0
2
72
0.97
1623--1669
2
22.5
2
87
8
67
48
0
6
44
1.28
2004--2054
25
2.0
25
100
0
102
49
11
15
23
1.78
2246--2279
16
2.1
16
100
0
68
17
17
35
29
1.93
6726--7100
190
2.0
190
99
0
741
29
15
27
27
1.96
8982--9352
183
2.0
182
94
0
652
33
12
20
34
1.89
9433--9766
178
1.9
177
86
5
449
35
14
14
35
1.87
14928--14978
16
3.2
16
100
0
102
35
19
19
25
1.95
18238--18308
16
4.5
16
92
1
108
16
4
42
36
1.68
18692--18853
47
3.6
46
80
4
186
23
25
38
12
1.90
18774--18849
23
3.4
23
73
10
77
28
26
35
9
1.87
19683--20406
40
16.7
40
72
16
416
36
19
26
17
1.94
19683--20406
88
8.3
87
84
2
872
36
19
26
17
1.94
19684--20406
175
4.2
173
85
4
892
36
19
26
17
1.94
27279--27325
23
2.0
23
100
0
94
61
12
25
0
1.31
28257--28444
25
7.5
25
73
4
164
21
29
28
20
1.98
28265--28445
75
2.4
75
86
0
245
21
29
28
19
1.98

Tables:   1

The End!