Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013761.1 Corchorus olitorius cultivar O-4 contig13794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33582

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
285--315
16
1.9
16
100
0
62
54
25
6
12
1.62
2223--2311
27
3.1
28
84
12
101
40
7
10
41
1.68
2554--2593
15
2.6
16
96
4
73
67
12
7
12
1.41
7359--7461
31
3.5
30
74
11
113
35
9
23
31
1.87
7360--7478
58
2.1
58
95
0
211
38
8
23
29
1.84
7657--7707
25
2.0
25
92
0
84
39
19
11
29
1.87
9077--9145
2
36.5
2
77
11
74
43
0
0
56
0.99
9074--9144
23
2.9
25
85
8
101
43
0
0
56
0.99
16130--16161
13
2.5
13
94
0
55
81
3
6
9
0.97
16609--16645
19
1.9
19
88
0
56
37
13
18
29
1.90
16848--16922
36
2.1
36
100
0
150
28
16
10
45
1.80
17824--17952
60
2.2
60
80
5
145
31
14
18
34
1.91
18007--18168
63
2.6
61
79
9
168
30
16
17
36
1.91
20127--20458
166
2.0
167
96
0
621
43
6
10
39
1.64
26370--26439
21
3.3
21
93
0
113
44
21
8
25
1.80
28926--28966
21
2.0
21
90
0
64
34
7
24
34
1.83

Tables:   1

The End!