Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013762.1 Corchorus olitorius cultivar O-4 contig13795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26706

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--27
1
26.0
1
100
0
52
100
0
0
0
0.00
737--809
29
2.5
29
97
0
137
27
8
9
54
1.61
5243--5290
22
2.2
22
81
3
62
45
8
12
33
1.72
5581--5627
22
2.2
20
85
7
58
46
10
12
29
1.76
5581--5638
20
2.8
21
84
10
66
48
10
10
31
1.71
5658--5711
22
2.5
20
77
16
54
50
14
9
25
1.73
5700--5838
45
3.1
45
65
12
115
50
7
10
32
1.63
5701--5881
88
2.1
86
92
3
299
49
7
9
32
1.65
5920--5962
20
2.0
20
86
8
59
53
6
9
30
1.59
10341--10392
26
1.9
28
88
7
81
59
9
13
17
1.60
11239--11271
3
11.0
3
87
12
50
30
0
0
69
0.88
11270--11333
26
2.4
27
78
5
67
4
31
0
64
1.14
11568--11642
28
2.7
28
80
14
75
30
22
10
36
1.88
11597--11649
28
1.9
28
88
3
81
26
22
15
35
1.93
13483--13513
16
1.9
16
93
0
53
54
3
12
29
1.53
17916--17973
27
2.1
27
100
0
116
32
15
13
37
1.87
20555--20738
91
2.0
91
98
0
359
48
17
13
20
1.81
22193--22232
3
13.3
3
84
10
55
67
2
30
0
1.04

Tables:   1

The End!