Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013763.1 Corchorus olitorius cultivar O-4 contig13796, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8051
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5646 original size:2 final size:2

Alignment explanation


    Indices: 5639--5673  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       5629 ATTAATAATC

                                                                
       5639 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5674 ACCTTTGGGC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:5908 original size:26 final size:26

Alignment explanation


    Indices: 5872--5925  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       5862 TGAACTTCAT

                  *                   
       5872 ATAATCCATTCATGCATAATATGATA
          1 ATAATCAATTCATGCATAATATGATA

                                      
       5898 ATAATCAATTCATGCATAATATGATA
          1 ATAATCAATTCATGCATAATATGATA

              
       5924 AT
          1 AT

       5926 TTAGCTTGGC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.44, C:0.13, G:0.07, T:0.35


Consensus pattern (26 bp):   
ATAATCAATTCATGCATAATATGATA
Done.