Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013770.1 Corchorus olitorius cultivar O-4 contig13803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52028

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3313--3365
22
2.4
22
81
6
63
62
11
7
18
1.52
4642--4677
19
1.9
18
88
5
54
30
22
8
38
1.83
11538--11565
14
2.0
14
100
0
56
7
0
0
92
0.37
19515--19549
15
2.2
16
90
5
54
14
5
11
68
1.37
20431--20463
12
2.8
12
90
0
57
24
6
21
48
1.72
20223--20671
239
1.9
239
99
0
880
26
14
14
44
1.83
22572--22607
19
1.9
18
88
5
54
33
22
2
41
1.68
36236--36298
22
2.9
22
85
2
74
28
14
7
49
1.71
36292--36675
22
17.6
22
70
12
96
35
17
9
36
1.83
36265--36374
44
2.5
45
79
7
109
34
17
13
34
1.89
36306--36394
45
2.0
45
80
8
101
37
16
12
33
1.87
36446--36547
23
4.5
23
86
1
109
39
14
9
36
1.80
36446--36569
45
2.7
43
73
19
101
37
16
9
36
1.81
36490--36649
82
1.9
84
82
2
198
34
18
6
40
1.77
36849--37261
22
18.6
22
71
12
238
34
17
9
38
1.82
36818--37011
88
2.2
87
81
8
216
35
15
8
40
1.78
36818--37542
44
16.5
42
69
15
177
36
17
9
36
1.83
37287--37538
22
11.3
22
73
9
152
38
18
10
32
1.85
37274--37452
68
2.6
68
94
0
304
39
16
10
34
1.82
37274--37542
68
4.0
66
85
5
178
38
18
10
32
1.84
37701--37739
19
2.0
20
90
5
62
69
0
2
28
1.02
37711--37751
19
2.2
19
86
8
57
70
0
2
26
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41651--41725
35
2.1
35
95
0
132
40
20
17
22
1.92
49017--49598
297
2.0
292
87
3
837
23
14
17
44
1.86
51228--51258
16
1.9
16
93
0
53
41
32
16
9
1.80

Tables:   1

The End!