Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013775.1 Corchorus olitorius cultivar O-4 contig13808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14764

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
244--368
27
4.7
27
91
2
173
40
29
15
15
1.87
445--3028
35
73.3
35
77
4
2011
42
22
16
18
1.89
456--3028
106
24.3
106
79
5
2016
42
22
16
18
1.89
444--3028
141
18.3
139
78
5
1837
42
22
16
18
1.89
4312--4362
23
2.3
23
83
12
63
33
11
7
47
1.69
4926--4976
14
3.6
14
80
15
61
37
11
7
43
1.71
4928--4986
28
2.1
28
81
12
68
33
13
10
42
1.78
12001--12049
7
6.9
7
83
4
62
30
4
0
65
1.11
12003--12049
22
2.1
22
88
7
69
27
4
0
68
1.08

Tables:   1

The End!