Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013777.1 Corchorus olitorius cultivar O-4 contig13810, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11315

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1468--1505
13
2.9
13
96
0
67
50
13
0
36
1.42
2272--2315
22
2.0
21
82
4
52
43
4
6
45
1.51
2413--2442
15
2.1
15
93
6
53
6
10
0
83
0.81
3908--4438
22
24.4
22
70
14
246
35
16
9
38
1.81
4322--4436
43
2.7
43
85
9
146
35
13
9
41
1.76
4540--4687
22
6.7
22
75
3
120
31
13
10
43
1.78
4583--4708
44
2.9
44
77
2
119
34
11
9
44
1.74
4675--4757
22
3.7
23
79
12
82
40
14
6
38
1.71
4692--4756
25
2.8
25
84
11
84
36
16
6
40
1.74
4825--4965
22
6.5
22
76
10
96
39
18
5
36
1.74
4839--4965
44
2.9
44
80
4
150
40
18
6
34
1.75
4825--4965
66
2.1
65
79
8
151
39
18
5
36
1.74
5094--5140
22
2.1
23
84
4
60
34
14
6
44
1.71
5166--5603
22
20.1
22
69
15
178
36
15
10
38
1.81
5501--5622
44
2.9
42
75
18
126
35
13
9
41
1.77
5704--5873
22
7.7
22
74
7
123
33
12
10
43
1.77
5791--5896
22
4.8
23
75
10
89
33
12
9
44
1.74
5838--5940
22
4.6
23
75
12
72
37
13
9
38
1.78
5989--6150
22
7.4
22
72
12
95
38
19
6
35
1.78
5989--6150
44
3.7
43
78
7
166
38
19
6
35
1.78
5989--6150
66
2.5
65
78
8
166
38
19
6
35
1.78
6194--6379
22
8.4
22
73
12
76
37
16
9
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6240--6388
22
6.8
21
73
8
118
35
16
10
36
1.84
6234--6382
44
3.4
43
76
7
138
35
16
10
37
1.83
6183--6390
66
3.1
66
81
6
215
38
18
8
34
1.82
6553--6591
20
2.0
20
85
10
53
64
2
5
28
1.28
7872--7970
22
4.5
22
73
13
69
30
17
11
41
1.84
8039--8128
22
4.0
24
83
9
102
40
16
6
36
1.75
8085--8147
23
2.7
23
87
4
65
39
15
7
36
1.77

Tables:   1

The End!