Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013778.1 Corchorus olitorius cultivar O-4 contig13811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72864

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1062--1180
46
2.6
46
94
1
202
33
6
16
42
1.75
1485--1511
14
1.9
14
100
0
54
22
22
18
37
1.95
1885--1911
14
1.9
14
100
0
54
22
22
18
37
1.95
1359--2140
400
2.0
398
96
1
1458
30
11
19
38
1.87
7203--7234
3
10.7
3
100
0
64
65
0
0
34
0.93
18195--18239
3
15.3
3
95
4
83
64
0
0
35
0.94
18241--18302
3
21.0
3
78
15
58
32
3
0
64
1.09
18241--18307
18
3.8
17
77
11
64
34
2
0
62
1.10
25710--25740
14
2.3
14
94
5
55
29
12
0
58
1.35
26680--26738
16
3.7
16
80
6
66
57
0
35
6
1.25
35192--35271
41
2.0
40
90
4
126
37
10
5
47
1.59
35201--35283
41
2.0
41
92
0
139
36
13
3
46
1.60
42338--42388
2
25.5
2
100
0
102
0
49
0
50
1.00
44666--44828
81
2.0
81
95
0
290
35
7
4
51
1.53
45398--45475
33
2.4
33
95
2
140
29
6
15
48
1.69
52026--52090
33
2.0
33
81
6
78
50
3
40
6
1.43
71341--71387
10
4.6
10
78
5
58
40
21
8
29
1.83

Tables:   1

The End!