Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013780.1 Corchorus olitorius cultivar O-4 contig13813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28794

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
577--668
23
4.0
23
76
5
80
39
19
6
34
1.78
368--834
22
21.5
22
72
12
207
36
17
8
37
1.81
940--1358
22
18.9
22
68
15
175
34
15
9
40
1.80
1206--1592
44
8.5
44
67
15
171
37
17
8
36
1.79
1358--1588
22
10.5
22
70
8
139
37
16
9
36
1.81
1376--1592
66
3.3
67
80
7
205
38
17
9
35
1.82
1755--1793
20
2.0
20
85
10
53
64
2
5
28
1.28
2336--2386
22
2.3
22
96
0
93
27
19
23
29
1.98
12473--12522
23
2.2
23
82
7
57
20
8
2
70
1.23
12489--12526
19
2.0
19
89
0
58
18
7
5
68
1.34
27497--27585
2
48.5
2
70
16
59
51
0
0
48
1.00
27495--27545
9
5.8
9
78
19
54
49
0
0
50
1.00
27499--27648
18
8.3
18
72
16
91
51
2
0
45
1.20
27496--27564
20
3.7
19
73
21
65
52
0
0
47
1.00
27497--27628
11
12.0
11
65
22
55
52
2
0
44
1.19
27504--27641
17
8.2
16
67
16
57
52
2
0
44
1.21
28196--28227
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!