Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013783.1 Corchorus olitorius cultivar O-4 contig13816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24636

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32--105
31
2.4
30
84
8
87
36
16
21
25
1.94
89--148
29
2.1
29
85
11
81
33
5
25
36
1.78
1157--1195
20
2.0
20
100
0
78
25
41
5
28
1.77
1272--1315
13
3.5
13
81
6
63
50
15
25
9
1.74
1265--1315
25
2.0
25
96
0
93
49
13
25
11
1.76
1267--1315
13
3.9
12
78
7
53
48
14
26
10
1.75
7128--7152
2
12.5
2
100
0
50
48
0
0
52
1.00
12926--13477
54
10.3
52
81
7
423
30
22
18
27
1.97
13010--13477
213
2.2
215
82
3
543
30
22
19
27
1.98
12983--13477
108
4.6
108
80
5
520
30
22
19
28
1.98
13441--14211
35
21.3
35
87
7
940
42
18
13
25
1.87
15346--15421
40
1.9
40
83
2
100
38
7
17
36
1.79
15600--15666
26
2.5
27
79
13
77
10
20
1
67
1.29
19425--19485
29
2.1
30
90
3
97
62
6
3
27
1.36
19431--19496
29
2.3
29
86
0
87
63
9
3
24
1.38

Tables:   1

The End!