Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013785.1 Corchorus olitorius cultivar O-4 contig13818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65497

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
189--263
27
2.8
26
88
12
107
44
26
13
16
1.84
2408--2443
19
1.9
18
88
5
54
33
22
2
41
1.68
12167--12202
19
1.9
18
88
5
54
33
22
2
41
1.68
12167--12213
11
4.7
10
80
17
53
31
21
6
40
1.78
13316--13355
20
2.0
21
85
5
55
37
5
20
37
1.74
14386--14418
15
2.2
16
89
10
52
39
12
12
36
1.80
18636--18669
16
2.2
16
89
5
52
17
5
14
61
1.52
19069--19131
26
2.4
25
80
12
74
50
6
14
28
1.67
21534--21564
16
1.9
16
100
0
62
12
6
25
54
1.62
24677--24716
15
2.6
16
88
4
55
15
10
12
62
1.54
25163--25749
303
1.9
303
87
2
856
26
19
19
33
1.96
28290--28332
22
2.0
20
91
8
68
2
20
0
76
0.89
29454--29515
30
2.1
30
96
0
115
25
24
4
45
1.73
31950--31979
10
3.1
10
95
4
53
0
23
0
76
0.78
35807--35841
18
1.9
18
100
0
70
22
28
14
34
1.93
41706--41784
33
2.4
33
80
2
88
31
21
22
24
1.98
41726--41800
33
2.3
33
83
0
96
30
25
22
21
1.99
44226--44259
9
3.7
9
88
4
50
50
2
29
17
1.61
53115--53721
303
2.0
303
87
1
885
26
19
19
34
1.96
55587--56161
299
1.9
300
85
4
791
26
21
18
33
1.96
57333--57935
303
2.0
303
88
1
895
27
20
18
33
1.96
60411--60436
11
2.4
11
100
0
52
7
15
7
69
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61642--61695
26
2.0
27
92
3
92
33
9
12
44
1.75
61705--61759
28
2.0
28
92
3
94
38
5
12
43
1.66
64867--64933
21
3.1
21
78
2
71
19
46
20
13
1.83

Tables:   1

The End!