Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013795.1 Corchorus olitorius cultivar O-4 contig13828, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56544

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5900--5960
3
20.3
3
96
0
113
1
32
0
65
1.02
6475--6539
25
2.8
22
76
17
60
1
26
0
72
0.94
7201--7249
24
2.1
22
81
7
53
8
8
4
79
1.04
22811--22860
7
7.4
7
82
17
70
28
28
0
44
1.55
22814--22860
4
12.8
4
82
17
66
27
27
0
44
1.55
23914--24050
22
6.1
22
78
8
109
36
17
8
37
1.79
24185--24275
23
4.0
23
85
2
121
40
15
6
37
1.73
23935--24998
22
48.6
22
68
12
280
36
16
9
37
1.81
24576--24831
42
5.8
42
70
13
133
35
14
10
39
1.81
24523--24742
64
3.4
65
74
13
157
39
16
9
35
1.80
24845--24899
28
1.9
29
88
3
85
38
5
10
45
1.63
24999--25344
22
15.3
22
67
12
119
37
16
9
37
1.80
24930--25075
78
1.9
78
86
2
213
34
19
9
36
1.84
25035--25217
47
3.8
46
75
10
152
39
14
6
39
1.72
25275--25344
21
3.3
20
73
16
61
34
17
10
38
1.83
25897--25921
10
2.5
10
100
0
50
80
8
12
0
0.92
26013--26055
22
2.0
22
85
0
59
37
18
11
32
1.87
26696--26753
20
2.8
21
92
5
91
29
12
17
41
1.85
26696--26775
42
1.9
42
84
5
108
30
11
20
38
1.87
26693--26817
22
5.8
22
77
7
105
29
11
18
40
1.85
26694--26816
64
1.9
65
80
9
144
30
10
18
40
1.84
30090--30123
18
1.9
17
88
5
50
38
14
20
26
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51277--51678
163
2.5
164
93
1
673
24
17
25
32
1.97
51277--51678
82
4.9
82
92
1
655
24
17
25
32
1.97

Tables:   1

The End!