Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013796.1 Corchorus olitorius cultivar O-4 contig13829, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 821

Length: 1369
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Found at i:64 original size:30 final size:29

Alignment explanation


    Indices: 5--64  Score: 68
    Period size: 30  Copynumber: 2.0  Consensus size: 29

          1 CTAG

                              *     *    
          5 TTTATGCTTTAATTTTAATTTTCCTTTAA
          1 TTTATGCTTTAATTTTAAGTTTCCATTAA

                        *                  
         34 TTTATGTCTTTATTTTTCAAGTTT-CATTAA
          1 TTTATG-CTTTAATTTT-AAGTTTCCATTAA

             
         64 T
          1 T

         65 AAACTATCTA


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  29    6  0.23
  30   15  0.58
  31    5  0.19

ACGTcount: A:0.23, C:0.10, G:0.05, T:0.62


Consensus pattern (29 bp):   
TTTATGCTTTAATTTTAAGTTTCCATTAA
Done.