Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013801.1 Corchorus olitorius cultivar O-4 contig13834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9718

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
538--571
17
2.0
17
88
0
50
5
20
8
64
1.43
1448--1489
19
2.2
19
100
0
84
19
4
26
50
1.67
2008--2088
28
3.0
27
87
3
110
38
27
14
19
1.91
2362--2565
50
4.0
50
95
0
354
26
25
12
35
1.91
2578--2941
50
7.3
51
90
4
325
28
13
28
29
1.94
2621--2958
50
6.8
50
94
0
579
28
13
27
30
1.94
3560--3709
50
3.0
50
82
5
196
38
12
15
34
1.85
4302--4333
8
3.9
8
92
8
55
9
0
3
87
0.64
4301--4366
9
7.0
9
74
16
62
13
0
7
78
0.94
4315--4382
31
2.2
32
92
5
113
17
0
11
70
1.16
4309--4401
40
2.4
39
81
8
111
16
1
10
72
1.18
4309--4402
36
2.5
38
77
15
113
15
1
10
72
1.17

Tables:   1

The End!