Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013802.1 Corchorus olitorius cultivar O-4 contig13835, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1692
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:170 original size:13 final size:13

Alignment explanation


    Indices: 152--176  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        142 TTGCCTAAAA

                         
        152 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
        165 AATAATTTTAAG
          1 AATAATTTTAAG

        177 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.