Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013803.1 Corchorus olitorius cultivar O-4 contig13836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9732
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:4931 original size:58 final size:58

Alignment explanation


    Indices: 4841--4956  Score: 196
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       4831 TACTGGAATG

                                 *   *                           *    
       4841 CGGAGTGTGTTAGAGGAAACTGCAATAGAATTGTATATGGCATCCAAGATTTCCTAGA
          1 CGGAGTGTGTTAGAGGAAACTACAACAGAATTGTATATGGCATCCAAGATTTCATAGA

                            *                                         
       4899 CGGAGTGTGTTAGAGGGAACTACAACAGAATTGTATATGGCATCCAAGATTTCATAGA
          1 CGGAGTGTGTTAGAGGAAACTACAACAGAATTGTATATGGCATCCAAGATTTCATAGA

       4957 TTGTGATAGT


Statistics
Matches: 54,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  58   54  1.00

ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27


Consensus pattern (58 bp):   
CGGAGTGTGTTAGAGGAAACTACAACAGAATTGTATATGGCATCCAAGATTTCATAGA
Done.