Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013807.1 Corchorus olitorius cultivar O-4 contig13840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50933

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1856--1886
12
2.6
12
94
0
53
25
3
0
70
1.02
3894--3950
30
1.9
29
89
10
89
21
14
5
59
1.54
8360--8527
22
7.5
22
76
11
121
40
10
13
35
1.79
8377--8527
67
2.3
66
82
10
184
39
9
12
37
1.77
8432--8523
45
2.0
46
81
6
107
38
9
11
40
1.75
18815--18911
48
2.0
48
93
0
167
40
13
10
36
1.79
30385--30444
2
30.5
2
74
15
54
48
1
3
46
1.28
30403--30440
13
2.6
14
84
16
51
50
0
2
47
1.15
30357--30446
20
4.2
20
74
18
67
46
4
2
46
1.35
31093--31130
11
3.5
11
85
10
51
57
2
0
39
1.12
33012--33082
31
2.4
29
78
4
79
25
14
26
33
1.94
39802--39845
1
44.0
1
81
0
52
0
0
9
90
0.44
39802--39845
10
4.5
10
88
5
72
0
0
9
90
0.44
39798--39845
18
2.7
18
90
0
78
0
0
10
89
0.48
39798--39855
26
2.2
26
85
11
75
0
3
10
86
0.69
44635--44670
17
2.1
17
89
0
54
30
11
19
38
1.86
48598--48738
49
3.0
47
81
9
162
24
15
7
51
1.70
49552--49588
15
2.5
15
100
0
74
43
16
24
16
1.87

Tables:   1

The End!