Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013814.1 Corchorus olitorius cultivar O-4 contig13847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50439

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
707--997
54
5.4
54
78
3
291
27
15
19
36
1.93
704--997
106
2.7
107
83
3
331
28
15
19
36
1.93
984--1265
54
5.2
54
82
2
325
27
17
22
32
1.96
984--1265
108
2.6
107
85
1
368
27
17
22
32
1.96
8901--8930
16
1.9
15
93
6
51
20
0
0
80
0.72
9193--9222
14
2.1
14
93
0
51
26
3
13
56
1.52
14555--14657
43
2.4
44
85
1
118
34
9
14
40
1.79
14577--14657
22
3.7
22
85
1
101
37
8
13
40
1.75
14538--14657
22
5.5
21
74
4
96
35
9
15
40
1.79
14806--14872
31
2.2
32
86
8
102
52
19
5
22
1.67
21081--21168
33
2.6
35
89
7
144
28
3
13
54
1.55
24637--24696
2
33.0
2
74
24
53
51
1
1
45
1.21
26091--26138
17
2.8
17
78
12
53
68
0
2
29
1.01
29349--29402
25
2.2
25
83
3
74
61
3
5
29
1.36
29436--29467
9
3.8
9
84
16
50
53
37
9
0
1.34
31165--31234
30
2.3
30
97
0
131
41
5
41
11
1.65
32556--32802
123
2.0
123
97
0
467
39
17
21
22
1.92
33476--33526
6
8.5
6
95
0
93
17
17
47
17
1.84
44222--44391
60
2.6
64
79
14
181
49
18
13
18
1.79
47871--48039
82
2.1
82
88
1
250
40
15
16
26
1.89
48033--48064
12
2.6
13
90
9
50
75
0
0
25
0.81

Tables:   1

The End!