Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013820.1 Corchorus olitorius cultivar O-4 contig13853, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3609
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36


Found at i:668 original size:31 final size:31

Alignment explanation


    Indices: 569--669  Score: 98
    Period size: 31  Copynumber: 3.3  Consensus size: 31

        559 CCATTTCACG

                                           
        569 GAGGGACTAAATTGATCTCTTTTCAATAGTA
          1 GAGGGACTAAATTGATCTCTTTTCAATAGTA

              *              ***    *   * *
        600 GAAGGACTAAATTGA-CAGATTT-GATAATG
          1 GAGGGACTAAATTGATCTCTTTTCAATAGTA

                              *     *      
        629 GAGGGACTAAATTGATCTTTTTTCTATAGTA
          1 GAGGGACTAAATTGATCTCTTTTCAATAGTA

            *         
        660 CAGGGACTAA
          1 GAGGGACTAA

        670 TCAGGTACTT


Statistics
Matches: 53,  Mismatches: 15, Indels: 4
        0.74            0.21        0.06

Matches are distributed among these distances:
  29   18  0.34
  30    8  0.15
  31   27  0.51

ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33


Consensus pattern (31 bp):   
GAGGGACTAAATTGATCTCTTTTCAATAGTA
Done.