Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013821.1 Corchorus olitorius cultivar O-4 contig13854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34138

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11810--11845
19
1.9
18
88
5
54
33
22
2
41
1.68
20075--20462
54
7.2
54
84
4
469
26
18
5
49
1.70
20075--20940
108
8.3
107
72
14
521
24
20
5
49
1.70
20075--20462
162
2.4
160
86
2
517
26
18
5
49
1.70
20439--20550
22
5.1
22
88
0
161
14
28
4
52
1.60
20553--20840
53
5.4
52
86
5
348
27
20
5
46
1.73
20553--20840
105
2.7
105
84
7
345
27
20
5
46
1.73
20920--21026
40
2.8
37
75
14
94
25
16
10
47
1.78
23890--23925
19
1.9
18
88
5
54
41
8
22
27
1.82
28978--29040
30
2.1
31
88
5
94
25
11
4
58
1.51
29345--29398
22
2.6
20
75
11
54
46
5
11
37
1.63
29684--29719
18
2.1
18
89
5
56
44
5
11
38
1.63
31187--31224
18
2.1
19
90
5
60
10
15
10
63
1.52
33633--33711
29
2.8
29
98
1
151
37
7
31
22
1.82

Tables:   1

The End!