Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013826.1 Corchorus olitorius cultivar O-4 contig13859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6191

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--30
2
13.0
2
100
0
52
50
0
0
50
1.00
183--216
6
5.5
6
86
6
50
32
14
2
50
1.58
764--866
44
2.3
44
81
0
116
37
6
18
36
1.77
691--873
22
8.3
22
70
8
84
35
9
16
38
1.81
960--1087
44
2.9
44
83
6
143
37
8
14
39
1.77
958--1087
22
6.0
21
79
6
116
38
8
14
38
1.77
1578--1602
2
12.5
2
100
0
50
48
0
0
52
1.00
1600--1626
4
6.8
4
100
0
54
25
0
22
51
1.48

Tables:   1

The End!