Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013832.1 Corchorus olitorius cultivar O-4 contig13865, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59530

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1809--1865
21
2.7
21
69
0
51
42
14
33
10
1.79
3919--3948
14
2.1
15
93
6
53
33
16
6
43
1.74
6310--6338
15
1.9
15
100
0
58
0
6
6
86
0.72
7182--7282
28
3.6
28
94
1
168
39
23
15
20
1.91
7156--7282
28
4.6
28
89
1
159
38
23
16
21
1.93
24426--24708
35
7.7
35
78
12
273
24
17
24
33
1.96
24429--24675
76
3.3
75
89
3
369
25
17
23
33
1.96
25228--25267
6
6.7
6
91
8
64
85
0
15
0
0.61
25943--25969
7
3.9
7
100
0
54
29
0
55
14
1.40
30262--30515
62
4.1
62
86
2
298
24
28
21
24
1.99
30304--30547
123
2.0
124
80
7
273
26
27
21
25
1.99
30913--30996
21
4.0
21
83
9
107
19
36
15
28
1.92
33978--34022
21
2.1
21
83
0
54
17
22
31
28
1.97
42207--42459
22
11.6
21
73
16
153
34
9
18
37
1.84
42223--42449
66
3.5
65
78
12
191
35
9
18
37
1.83
42798--42896
22
4.5
22
77
7
76
42
8
13
36
1.73
42798--42896
44
2.2
44
82
3
128
42
8
13
36
1.73
42819--42898
22
3.6
22
73
6
81
41
8
15
35
1.78
42970--43156
22
8.7
21
75
10
137
39
8
15
36
1.77
42970--43157
41
4.4
41
76
13
150
39
7
15
36
1.77
43311--43362
22
2.4
22
90
0
77
46
7
11
34
1.69
43916--43963
13
3.6
13
91
5
78
2
16
12
68
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47079--47181
51
2.0
51
96
0
188
37
15
17
29
1.91

Tables:   1

The End!