Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013834.1 Corchorus olitorius cultivar O-4 contig13867, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4545
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:3805 original size:18 final size:18

Alignment explanation


    Indices: 3782--3816  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       3772 AATCGAATAT

                  *           
       3782 AGAAAAGAAAAAGAAAAA
          1 AGAAAAAAAAAAGAAAAA

                        *    
       3800 AGAAAAAAAAAATAAAA
          1 AGAAAAAAAAAAGAAAA

       3817 CACAATCTCC


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03


Consensus pattern (18 bp):   
AGAAAAAAAAAAGAAAAA
Done.