Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013836.1 Corchorus olitorius cultivar O-4 contig13869, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72825

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3231--3385
21
7.4
21
90
1
224
29
18
25
25
1.98
11142--11520
35
10.7
36
89
3
553
29
17
23
29
1.97
13465--13500
19
1.9
18
88
5
54
33
22
2
41
1.68
13481--13512
11
2.8
12
86
13
50
37
18
6
37
1.76
18447--18526
29
2.7
29
81
9
74
38
15
7
38
1.75
20588--20675
27
3.3
27
90
6
135
15
17
28
38
1.90
25020--25104
31
2.8
31
90
1
136
52
8
17
21
1.70
28328--28552
36
6.3
35
87
7
310
45
11
14
28
1.79
28328--28552
71
3.1
70
89
5
326
45
11
14
28
1.79
28521--28579
27
2.2
27
87
0
82
42
10
18
28
1.83
28541--28614
35
2.1
35
87
5
105
45
8
13
32
1.73
29926--29954
14
2.1
14
100
0
58
20
24
13
41
1.89
37956--38037
36
2.3
36
87
4
112
28
21
7
42
1.79
44381--44478
35
2.8
35
84
4
117
27
20
9
42
1.82
45273--45314
21
2.0
21
90
0
66
33
26
21
19
1.97
45433--46195
36
21.4
35
84
6
810
26
14
11
47
1.79
45949--46006
28
2.1
28
90
3
91
22
12
15
50
1.77
45977--46195
73
3.0
73
90
2
325
26
14
10
47
1.77
50035--50130
46
2.1
46
92
0
156
28
17
12
41
1.86
69521--69546
9
2.9
9
100
0
52
23
19
46
11
1.82
69557--69599
17
2.6
16
82
10
50
37
4
48
9
1.56

Tables:   1

The End!