Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013842.1 Corchorus olitorius cultivar O-4 contig13875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56124

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1797--1942
32
4.5
32
91
1
220
32
24
17
24
1.97
4607--4647
19
2.2
19
90
0
64
17
41
29
12
1.85
10019--10058
15
2.6
16
88
4
55
62
12
10
15
1.54
11401--11460
29
2.0
31
87
6
88
35
18
8
38
1.81
11852--11916
25
2.6
25
92
0
103
20
23
16
40
1.92
11799--12063
86
3.1
86
87
1
370
24
22
13
40
1.89
11945--12002
25
2.3
25
87
0
80
20
24
13
41
1.89
12105--12224
36
3.6
36
72
23
136
25
23
14
36
1.92
11799--12185
147
2.6
146
76
8
424
24
23
13
38
1.90
11963--12286
61
5.3
61
86
2
418
26
24
12
36
1.91
20531--20560
6
4.8
6
92
8
51
30
0
0
70
0.88
20528--20559
13
2.5
13
100
0
64
31
0
0
68
0.90
22292--22317
12
2.2
12
100
0
52
7
15
7
69
1.35
23081--23120
15
2.6
16
96
4
73
12
7
12
67
1.41
23364--23450
33
2.7
32
83
13
99
42
10
6
40
1.66
27690--27716
12
2.2
12
100
0
54
7
14
7
70
1.32
28480--28519
15
2.6
16
92
4
64
12
10
12
65
1.49
34258--34308
22
2.3
23
82
3
59
17
3
9
68
1.33
38967--39038
27
2.7
27
81
8
85
20
15
23
40
1.91
40651--40754
21
5.0
21
96
0
190
30
14
25
29
1.95
53798--53823
8
3.2
8
100
0
52
73
0
15
11
1.11

Tables:   1

The End!