Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013843.1 Corchorus olitorius cultivar O-4 contig13876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48917

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4713--4751
15
2.6
15
95
0
69
12
0
25
61
1.31
12888--12936
25
2.0
25
87
0
71
36
12
40
10
1.77
19090--19126
15
2.2
17
86
13
51
10
0
21
67
1.21
22639--22704
29
2.4
26
85
7
78
46
27
9
16
1.77
23751--23833
41
2.0
40
83
2
103
37
12
18
32
1.87
23790--23892
46
2.2
46
75
11
102
41
10
15
32
1.81
24286--24319
2
17.0
2
100
0
68
50
0
0
50
1.00
29071--29104
17
1.9
18
94
5
61
55
8
11
23
1.63
29901--29948
21
2.3
21
96
0
87
20
25
4
50
1.66
45629--45691
30
2.2
28
89
10
94
33
12
12
41
1.81
45642--45703
30
2.1
30
88
5
92
30
11
11
46
1.75
45895--45962
34
2.0
34
100
0
136
47
26
8
17
1.77
46214--46242
4
7.5
4
92
7
51
24
0
0
75
0.80
46214--46242
15
1.9
15
100
0
58
24
0
0
75
0.80
46862--46905
17
2.6
17
77
0
52
29
36
11
22
1.89
48861--48913
2
26.5
2
100
0
106
50
0
49
0
1.00

Tables:   1

The End!