Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013846.1 Corchorus olitorius cultivar O-4 contig13879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71524

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16170--16255
31
2.7
31
81
3
109
19
20
23
36
1.95
16171--16267
31
3.1
31
80
3
95
18
21
24
35
1.96
21693--21718
2
13.0
2
100
0
52
50
0
0
50
1.00
22327--22371
23
2.0
23
95
0
81
37
6
15
40
1.74
23020--23063
16
2.8
16
83
10
56
50
0
0
50
1.00
23525--23569
23
2.0
23
100
0
90
37
8
13
40
1.76
26611--26639
2
15.0
2
92
7
51
48
0
0
51
1.00
26625--26858
117
2.0
117
95
4
420
50
6
12
29
1.66
29146--29189
12
3.6
12
84
6
61
36
13
25
25
1.92
29622--29689
31
2.2
31
92
2
111
30
25
10
33
1.89
31553--31587
17
2.2
16
90
10
54
28
5
0
65
1.15
35062--35086
2
12.5
2
100
0
50
0
0
48
52
1.00
48855--48888
5
6.8
5
86
0
50
20
5
0
73
1.04
55911--56191
95
3.0
95
99
0
553
42
17
16
23
1.89
59446--59504
9
6.4
9
77
11
66
0
0
13
86
0.57
59445--59504
5
12.0
5
84
11
70
0
0
15
85
0.61
59451--59504
17
3.4
16
89
5
83
0
0
12
87
0.56
60463--60489
2
13.5
2
100
0
54
51
0
0
48
1.00
60548--60580
13
2.5
13
95
0
57
24
18
0
57
1.40
63145--63229
22
3.9
21
75
3
71
31
11
15
41
1.83
63144--63229
44
2.0
44
81
4
102
32
11
15
40
1.83
63240--63303
22
2.9
22
72
9
58
46
7
10
34
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63503--63777
22
12.6
22
73
6
173
32
12
15
39
1.84
63501--63777
44
6.3
44
77
4
195
32
11
16
39
1.85
63501--63776
66
4.2
65
78
8
213
32
11
16
39
1.84
65384--65447
29
2.2
29
83
8
76
40
28
10
20
1.86
65967--66023
27
2.1
27
86
0
78
43
0
12
43
1.41
67517--67770
22
11.4
22
75
8
176
40
11
15
32
1.83
67555--67748
66
2.9
65
80
6
212
41
11
13
32
1.81
67793--67862
22
3.2
22
79
4
61
42
2
24
30
1.69
67824--67868
22
2.0
22
86
0
63
44
4
20
31
1.71
67891--68117
22
10.5
23
71
12
99
31
11
17
39
1.85
68006--68119
44
2.6
44
76
5
113
32
11
16
39
1.84
68926--68960
18
1.9
18
88
11
54
25
20
37
17
1.94
70300--70334
16
2.2
16
94
0
61
45
0
2
51
1.16

Tables:   1

The End!