Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001385.1 Corchorus olitorius cultivar O-4 contig01385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1583
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:506 original size:28 final size:28

Alignment explanation


    Indices: 459--513  Score: 85
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        449 TTTTTTCTGA

                           *            
        459 AAAAAAAAAATTGTGTTTTCCGTTTTTG
          1 AAAAAAAAAATTGTGATTTCCGTTTTTG

                                        
        487 AAAAAAAAAATT-TGAATTTCCGTTTTT
          1 AAAAAAAAAATTGTG-ATTTCCGTTTTT

        514 AATTTTGAGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  27    2  0.08
  28   23  0.92

ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42


Consensus pattern (28 bp):   
AAAAAAAAAATTGTGATTTCCGTTTTTG
Done.