Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013852.1 Corchorus olitorius cultivar O-4 contig13885, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6786
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30


Found at i:1259 original size:8 final size:8

Alignment explanation


    Indices: 1246--1274  Score: 58
    Period size: 8  Copynumber: 3.6  Consensus size: 8

       1236 ATAATTTATT

                    
       1246 CAATTAGA
          1 CAATTAGA

                    
       1254 CAATTAGA
          1 CAATTAGA

                    
       1262 CAATTAGA
          1 CAATTAGA

                 
       1270 CAATT
          1 CAATT

       1275 GTTGAAATAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   21  1.00

ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28


Consensus pattern (8 bp):   
CAATTAGA
Done.