Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013861.1 Corchorus olitorius cultivar O-4 contig13894, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55546

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1868--1933
33
2.0
33
85
5
89
12
33
39
15
1.84
5106--5143
11
3.2
12
78
14
51
60
15
5
18
1.53
5104--5145
13
3.4
13
74
12
52
59
16
4
19
1.54
5473--5543
28
2.6
27
80
8
72
39
7
19
33
1.79
5503--5561
27
2.2
27
84
0
73
37
8
20
33
1.83
8842--8876
16
2.2
16
90
5
54
51
11
0
37
1.38
8842--8886
15
2.9
15
83
6
54
48
11
0
40
1.39
9841--9869
3
10.0
3
92
7
51
65
0
0
34
0.93
29908--30050
75
1.9
76
95
1
261
33
22
20
23
1.97
31624--31791
83
2.0
83
88
5
250
54
1
10
33
1.45
32124--32165
22
1.9
22
85
0
57
16
14
26
42
1.86
41053--41111
1
59.0
1
79
0
64
0
0
10
89
0.47
41053--41109
17
3.3
17
90
9
89
0
0
10
89
0.49
41059--41111
10
5.5
10
85
14
76
0
0
9
90
0.45
41053--41110
18
3.3
17
90
7
89
0
0
10
89
0.48
44880--44925
4
11.5
4
100
0
92
0
23
0
76
0.79
46933--46974
20
2.1
21
87
12
63
19
21
14
45
1.85
50518--50768
126
2.0
126
97
0
475
19
19
16
44
1.87

Tables:   1

The End!