Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013864.1 Corchorus olitorius cultivar O-4 contig13897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69347

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2465--2533
29
2.4
29
92
4
115
24
17
17
40
1.90
4896--5226
167
2.0
167
94
1
583
33
9
11
45
1.74
6507--6535
14
2.0
15
93
6
51
48
3
0
48
1.18
7584--7625
3
14.3
3
95
5
77
33
0
0
66
0.92
7584--7622
20
2.0
20
100
0
78
33
0
0
66
0.92
12789--12855
31
2.2
31
86
5
93
47
8
19
23
1.77
12985--13125
31
4.6
30
78
5
131
32
17
11
38
1.86
14161--14236
31
2.5
31
88
0
116
36
9
15
38
1.80
14367--14433
31
2.2
29
84
5
89
22
17
10
49
1.77
15056--15113
29
2.0
30
83
10
75
31
20
15
32
1.94
15170--15241
31
2.3
31
85
0
90
31
16
20
30
1.95
20803--20838
18
2.0
18
100
0
72
22
5
0
72
1.05
21492--21528
1
37.0
1
91
0
56
94
2
2
0
0.36
22361--22390
15
2.0
15
93
0
51
43
26
10
20
1.83
26463--26504
2
21.0
2
100
0
84
0
50
0
50
1.00
26910--26953
3
14.7
3
90
9
72
0
36
0
63
0.95
29658--29710
4
13.8
4
84
7
74
26
22
1
49
1.60
29661--29704
11
3.9
11
90
3
61
29
20
2
47
1.62
32652--32684
16
2.0
17
88
5
50
12
6
27
54
1.60
41948--42015
29
2.3
29
80
5
75
39
26
13
20
1.89
50409--50448
20
2.0
20
90
0
62
40
15
10
35
1.80
52903--52931
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62934--63125
66
2.9
67
89
2
289
21
27
14
35
1.93
63352--63454
45
2.3
45
83
9
147
16
34
8
39
1.80
63485--63599
42
2.7
43
86
2
144
14
33
11
40
1.82
64471--64507
19
1.9
19
88
0
56
59
8
5
27
1.48
64841--64900
28
2.2
28
84
3
77
40
18
5
36
1.72
64882--64954
31
2.4
31
100
0
146
23
16
12
47
1.80
65329--65359
15
2.1
15
100
0
62
35
6
32
25
1.82
65600--65726
49
2.6
47
85
8
166
50
5
15
28
1.66
68340--68379
15
2.7
15
88
7
55
15
27
22
35
1.94
68341--68433
30
3.1
30
85
0
123
11
24
24
38
1.89
68374--68424
15
3.4
15
76
10
59
5
21
33
39
1.78

Tables:   1

The End!