Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013868.1 Corchorus olitorius cultivar O-4 contig13901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27931

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1856--1887
15
2.1
15
100
0
64
50
28
6
15
1.68
2479--2605
66
1.9
66
87
3
184
25
7
22
44
1.78
2491--2620
33
3.9
33
76
4
129
26
6
21
45
1.77
4094--4135
21
2.0
21
100
0
84
19
19
28
33
1.96
8676--9187
69
7.5
69
90
2
761
25
29
18
27
1.98
8676--9187
134
3.7
136
91
3
766
25
29
18
27
1.98
8670--9187
203
2.5
205
88
5
755
25
28
18
27
1.98
9200--9405
91
2.3
88
88
5
297
26
20
27
25
1.99
9200--9455
91
2.9
89
82
4
257
27
19
25
26
1.99
19306--19747
82
5.4
81
87
2
550
53
15
11
19
1.72
21380--21415
2
18.0
2
94
0
63
47
0
2
50
1.15
25350--25421
35
2.1
35
97
0
135
36
19
22
22
1.95
25539--25567
15
1.9
15
100
0
58
13
13
34
37
1.85
26627--26687
27
2.3
26
83
5
70
40
3
4
50
1.40
27362--27623
131
2.0
131
96
0
479
23
13
22
40
1.89

Tables:   1

The End!