Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013871.1 Corchorus olitorius cultivar O-4 contig13904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 707

Length: 1179
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23


Found at i:546 original size:23 final size:23

Alignment explanation


    Indices: 505--568  Score: 101
    Period size: 23  Copynumber: 2.8  Consensus size: 23

        495 CCAGGCCCTA

                  *                
        505 GCCCGGACATGTCCAAGCTAAAG
          1 GCCCGGGCATGTCCAAGCTAAAG

               *          *        
        528 GCCTGGGCATGTCCGAGCTAAAG
          1 GCCCGGGCATGTCCAAGCTAAAG

                              
        551 GCCCGGGCATGTCCAAGC
          1 GCCCGGGCATGTCCAAGC

        569 CACAGCCGGC


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  23   36  1.00

ACGTcount: A:0.23, C:0.31, G:0.31, T:0.14


Consensus pattern (23 bp):   
GCCCGGGCATGTCCAAGCTAAAG
Done.