Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013874.1 Corchorus olitorius cultivar O-4 contig13907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40157

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3579--3906
41
7.8
43
79
12
353
22
10
25
42
1.84
3577--3906
84
3.9
84
89
3
497
23
10
24
42
1.84
4291--4327
13
2.8
14
84
12
51
72
0
10
16
1.10
9300--9329
1
30.0
1
100
0
60
0
0
0
100
0.00
13669--13711
2
21.5
2
100
0
86
0
48
0
51
1.00
18661--18707
22
2.2
22
88
3
69
48
4
19
27
1.67
18727--18845
42
2.7
44
76
8
109
36
9
13
40
1.77
18787--18842
22
2.6
21
80
11
60
37
12
8
41
1.74
20380--20416
17
2.2
17
95
0
65
21
10
2
64
1.37
21737--21785
17
2.9
16
79
8
53
34
20
22
22
1.97
22167--22209
17
2.6
16
82
10
50
20
20
20
37
1.95
24098--24122
11
2.3
11
100
0
50
92
0
8
0
0.40
26439--26523
34
2.4
34
88
3
125
22
15
15
47
1.82
29314--29355
15
2.8
15
85
7
50
16
21
14
47
1.82
33265--33328
31
2.2
29
83
8
76
34
12
23
29
1.92
38208--38243
18
1.9
19
88
5
56
44
0
25
30
1.54
38753--38794
21
2.0
21
95
0
75
40
9
16
33
1.81

Tables:   1

The End!