Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013876.1 Corchorus olitorius cultivar O-4 contig13909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76497

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
522--572
24
2.1
25
82
17
63
68
1
29
0
1.00
850--882
14
2.4
14
85
5
50
48
0
12
39
1.40
7152--7197
9
5.0
9
86
2
56
80
0
15
4
0.86
7151--7197
18
2.5
19
83
10
62
78
0
14
6
0.93
8952--9643
145
4.6
144
86
6
866
30
20
15
33
1.94
8931--9546
145
4.2
145
87
4
898
29
20
15
33
1.94
10772--10806
2
17.5
2
100
0
70
51
0
0
48
1.00
18163--18335
31
5.7
31
65
13
99
27
20
19
32
1.97
18173--18331
60
2.7
60
91
0
246
26
20
19
33
1.96
18644--18692
23
2.1
23
88
0
71
34
10
14
40
1.79
19609--19667
21
3.0
19
70
18
57
33
18
10
37
1.85
26892--26940
21
2.3
23
80
16
61
44
0
0
55
0.99
29668--29702
17
2.0
18
88
5
54
54
5
0
40
1.24
32554--32610
25
2.4
24
82
5
71
31
8
3
56
1.47
33985--34019
2
17.5
2
100
0
70
48
0
0
51
1.00
36408--36492
42
2.1
38
83
12
100
56
4
10
28
1.53
36589--36627
19
1.9
19
90
10
60
46
2
0
51
1.14
39527--39561
11
3.2
11
83
0
52
77
17
5
0
0.96
40693--40722
2
14.5
2
93
6
51
50
0
3
46
1.18
41033--41067
17
2.0
18
94
5
63
51
0
5
42
1.25
42062--42086
11
2.3
11
100
0
50
92
8
0
0
0.40
43830--43942
58
1.9
58
89
3
174
31
15
20
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46104--46184
39
2.0
40
92
2
137
37
3
8
50
1.51
62199--62258
28
2.1
28
87
3
84
30
8
13
48
1.71

Tables:   1

The End!