Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013878.1 Corchorus olitorius cultivar O-4 contig13911, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37548

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4164--4198
18
1.9
18
88
0
52
45
0
11
42
1.40
8660--8736
32
2.4
32
89
4
111
19
27
22
31
1.98
8714--9029
162
1.9
163
92
1
528
34
12
14
38
1.84
9078--9114
2
18.5
2
94
0
65
45
0
0
54
1.00
9231--9475
30
8.5
30
67
18
119
39
8
1
51
1.40
9178--9319
44
3.3
44
75
11
141
38
6
0
54
1.31
9285--9323
17
2.3
17
86
0
51
35
2
0
61
1.10
9178--9360
84
2.1
89
87
6
261
39
6
0
53
1.31
9323--9507
17
12.6
16
68
25
81
40
10
1
48
1.45
9234--9519
156
1.8
157
82
8
366
39
9
1
50
1.41
9345--9522
87
2.1
87
92
5
299
38
10
1
50
1.45
13535--13565
2
15.5
2
93
0
53
45
0
3
51
1.17
13628--13754
32
4.0
32
84
2
139
28
16
26
28
1.97
16019--16060
21
2.0
22
90
4
68
21
21
9
47
1.79
16020--16065
21
2.2
21
84
7
58
26
17
8
47
1.76
20115--20156
21
2.0
22
90
4
68
23
30
11
33
1.91
21688--21836
76
2.0
76
82
5
185
41
10
18
29
1.84
24908--24968
27
2.3
26
83
8
79
31
16
21
31
1.95
24956--24985
14
2.1
14
93
0
51
23
16
23
36
1.94
24971--25396
213
2.0
214
97
0
809
28
26
20
24
1.99
26452--26504
26
2.0
28
92
7
92
64
3
9
22
1.40
26446--26507
26
2.4
25
84
7
88
66
3
8
22
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33418--33516
28
3.5
28
92
0
144
17
20
27
35
1.94
36607--36685
28
2.7
30
84
7
99
29
18
11
40
1.86
36809--36894
31
2.8
31
96
0
154
44
11
15
29
1.81

Tables:   1

The End!