Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001388.1 Corchorus olitorius cultivar O-4 contig01388, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 772

Length: 1287
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31


Found at i:1272 original size:21 final size:21

Alignment explanation


    Indices: 1246--1285  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1236 ATTGGATATA

                                 
       1246 TGAAACCCCAAGGTTTCAATT
          1 TGAAACCCCAAGGTTTCAATT

                               
       1267 TGAAACCCCAAGGTTTCAA
          1 TGAAACCCCAAGGTTTCAA

       1286 GC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25


Consensus pattern (21 bp):   
TGAAACCCCAAGGTTTCAATT
Done.