Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013880.1 Corchorus olitorius cultivar O-4 contig13913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41098

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
479--713
114
2.1
114
95
0
416
29
7
14
48
1.71
2632--2667
13
2.7
13
91
4
54
33
5
19
41
1.75
3103--3248
68
2.2
67
90
3
222
25
16
19
39
1.92
3816--4143
43
7.7
41
76
12
272
41
25
9
23
1.84
3814--4147
84
3.9
85
83
6
419
41
26
9
23
1.85
4214--4248
2
17.5
2
87
0
52
45
2
2
48
1.32
4214--4261
10
4.7
10
86
2
51
41
6
6
45
1.54
4214--4254
16
2.6
16
88
0
55
43
4
4
46
1.46
7303--7363
32
1.9
32
86
0
86
49
4
18
27
1.68
15144--15171
13
2.2
13
100
0
56
57
0
14
28
1.38
17044--17101
19
2.9
19
87
5
80
27
18
13
39
1.89
17044--17107
21
3.2
20
84
8
85
28
18
14
39
1.90
24283--24348
21
3.2
21
66
18
57
28
4
16
50
1.65
25302--25333
16
2.0
16
100
0
64
43
25
6
25
1.77
25667--25836
93
1.8
93
94
0
304
31
14
1
52
1.52
26403--26448
16
2.9
16
72
15
51
19
19
21
39
1.93
26484--26514
16
1.9
16
93
0
53
9
16
32
41
1.80
29294--29327
11
3.0
11
83
8
50
76
0
23
0
0.79
40474--40567
45
2.2
44
87
11
133
39
21
3
36
1.69

Tables:   1

The End!