Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013885.1 Corchorus olitorius cultivar O-4 contig13918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16353
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33


Found at i:14265 original size:5 final size:5

Alignment explanation


    Indices: 14257--14312  Score: 55
    Period size: 5  Copynumber: 11.0  Consensus size: 5

      14247 CTTTCCTTTA

                                                                     
      14257 GTTTT GTTTT GTTTT GTTTT GTATTTT GTTTTT GTTTT -TGTTT -TTTT
          1 GTTTT GTTTT GTTTT GTTTT G--TTTT G-TTTT GTTTT GT-TTT GTTTT

                       
      14304 -TTTT GTTTT
          1 GTTTT GTTTT

      14313 TGTGTTTTTG


Statistics
Matches: 46,  Mismatches: 1, Indels: 8
        0.84            0.02        0.15

Matches are distributed among these distances:
   4    8  0.17
   5   28  0.61
   6    5  0.11
   7    5  0.11

ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82


Consensus pattern (5 bp):   
GTTTT

Found at i:14324 original size:6 final size:6

Alignment explanation


    Indices: 14258--14320  Score: 78
    Period size: 6  Copynumber: 10.7  Consensus size: 6

      14248 TTTCCTTTAG

                                                                  * 
      14258 TTTTG- TTTTG- TTTTG- TTTTGT ATTTTGT TTTTGT TTTTGT TTTTTT
          1 TTTTGT TTTTGT TTTTGT TTTTGT -TTTTGT TTTTGT TTTTGT TTTTGT

                               
      14304 TTTTGT TTTTGT GTTTT
          1 TTTTGT TTTTGT -TTTT

      14321 TGTTAATTTT


Statistics
Matches: 53,  Mismatches: 2, Indels: 4
        0.90            0.03        0.07

Matches are distributed among these distances:
   5   15  0.28
   6   28  0.53
   7   10  0.19

ACGTcount: A:0.02, C:0.00, G:0.16, T:0.83


Consensus pattern (6 bp):   
TTTTGT
Done.