Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013888.1 Corchorus olitorius cultivar O-4 contig13921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23364

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
283--382
22
4.5
22
80
10
105
43
16
7
34
1.74
282--382
44
2.3
43
84
6
130
42
15
7
33
1.76
410--612
22
9.2
22
69
11
121
34
13
10
41
1.79
467--586
43
2.8
43
80
1
141
32
15
13
39
1.85
1316--2356
22
47.6
21
66
16
286
38
9
15
36
1.80
1384--2356
44
22.3
43
66
15
315
38
9
15
36
1.80
1452--1597
73
2.0
73
98
0
283
37
10
15
35
1.83
2048--2229
64
2.8
65
78
6
181
40
8
17
34
1.80
2256--2312
11
5.1
11
71
12
53
38
7
8
45
1.62
2437--2518
22
3.8
22
75
4
69
37
8
14
39
1.77
4883--4945
29
2.2
29
100
0
126
25
6
15
52
1.66
5319--5356
18
2.1
18
100
0
76
10
15
36
36
1.82
9330--9568
42
5.7
42
80
2
210
25
36
15
22
1.93
10604--10656
26
2.0
26
96
0
97
41
11
13
33
1.80
12101--12130
11
2.8
11
95
5
53
93
0
6
0
0.35
12816--13323
42
11.8
42
71
11
246
27
38
14
19
1.91
13037--13323
84
3.4
83
85
2
342
28
39
13
18
1.89
12844--13323
126
3.7
126
77
7
352
27
38
14
18
1.90
17589--17621
16
2.1
16
94
0
57
39
0
21
39
1.53
17909--17945
19
1.9
20
88
5
58
32
0
2
64
1.07
23069--23111
21
2.0
21
86
0
59
18
46
6
27
1.75

Tables:   1

The End!