Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001389.1 Corchorus olitorius cultivar O-4 contig01389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2045
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28


Found at i:1790 original size:7 final size:8

Alignment explanation


    Indices: 1759--1790  Score: 57
    Period size: 8  Copynumber: 4.1  Consensus size: 8

       1749 AAAAAAAAGG

                    
       1759 ATGAAAAA
          1 ATGAAAAA

                    
       1767 ATGAAAAA
          1 ATGAAAAA

                    
       1775 ATGAAAAA
          1 ATGAAAAA

                    
       1783 A-GAAAAA
          1 ATGAAAAA

             
       1790 A
          1 A

       1791 AGGAAAGAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   7    7  0.29
   8   17  0.71

ACGTcount: A:0.78, C:0.00, G:0.12, T:0.09


Consensus pattern (8 bp):   
ATGAAAAA

Done.