Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013895.1 Corchorus olitorius cultivar O-4 contig13928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77384

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6028--6150
61
2.0
61
100
0
246
44
14
17
22
1.86
9296--9405
58
1.9
58
86
0
157
43
6
6
43
1.55
13178--13238
22
2.8
22
89
0
86
26
45
24
3
1.68
21262--21302
21
2.0
21
90
4
66
39
7
26
26
1.82
25219--25305
37
2.4
37
86
7
117
25
6
17
50
1.70
28048--28403
119
3.0
118
92
2
590
34
23
8
33
1.85
42434--42763
178
1.9
178
89
3
522
36
16
13
34
1.87
42842--42868
2
13.5
2
100
0
54
48
0
0
51
1.00
60254--60662
202
2.0
202
94
1
723
43
8
11
36
1.72
60771--60851
39
2.0
40
92
2
137
37
3
8
50
1.51
61507--61557
25
2.0
25
96
0
93
31
13
7
47
1.72
61603--61686
42
2.0
42
100
0
168
38
14
21
26
1.91
73170--73241
26
2.8
25
83
12
83
29
4
22
44
1.71
74680--74746
22
3.2
20
77
12
55
38
11
5
43
1.66
74832--75328
22
22.5
22
68
11
130
38
16
8
37
1.79
75561--75802
22
10.8
22
74
11
188
35
16
9
38
1.80
75850--75931
21
3.8
22
81
10
98
41
17
9
31
1.82
75820--75915
44
2.2
43
85
5
122
41
20
6
31
1.77
75812--75931
22
5.6
23
75
14
96
41
17
8
32
1.79

Tables:   1

The End!