Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013896.1 Corchorus olitorius cultivar O-4 contig13929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57682

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77--132
29
2.0
28
92
3
94
28
10
21
39
1.87
2025--2190
31
5.5
30
70
8
113
35
15
18
30
1.92
2025--2187
60
2.7
59
90
3
220
35
14
19
30
1.92
2056--2156
29
3.4
28
72
8
85
33
13
19
32
1.91
2227--2393
61
2.8
61
86
1
212
29
19
16
34
1.94
2401--2460
30
2.0
30
100
0
120
20
26
10
43
1.83
2936--2983
19
2.6
18
83
9
60
37
2
0
60
1.09
5742--5822
40
2.0
40
97
0
153
24
11
14
49
1.76
5749--5834
40
2.2
40
87
4
120
29
12
12
45
1.79
27802--27840
2
21.5
2
80
19
50
56
0
0
43
0.99
27802--27840
9
4.3
10
78
21
50
56
0
0
43
0.99
27801--27838
5
7.2
5
94
5
58
57
0
0
42
0.98
35595--35630
18
2.0
18
100
0
72
44
5
16
33
1.71
38954--39001
8
5.8
8
78
9
51
18
4
12
64
1.43
38954--39005
17
3.1
17
78
10
61
19
5
11
63
1.47
41448--41522
3
25.0
3
100
0
150
33
0
0
66
0.92
49546--49616
21
3.4
21
94
3
117
28
18
26
26
1.98
50840--50891
17
3.1
17
75
10
52
17
5
11
65
1.44
51107--51164
28
2.1
28
87
6
82
44
1
5
48
1.35

Tables:   1

The End!