Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013898.1 Corchorus olitorius cultivar O-4 contig13931, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32002

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
651--690
20
2.0
20
95
0
71
47
10
32
10
1.70
1061--1155
47
2.0
47
100
0
190
37
6
12
43
1.68
6055--6216
59
2.7
58
85
4
216
28
18
16
37
1.92
8949--9014
7
9.4
7
91
4
107
0
0
10
89
0.49
8949--9014
1
66.0
1
78
0
69
0
0
10
89
0.49
10397--10430
1
34.0
1
93
0
50
0
5
0
94
0.32
11615--11672
24
2.4
24
82
0
62
34
44
3
17
1.65
11669--11696
6
4.7
6
100
0
56
32
50
0
17
1.47
23345--23496
76
2.0
76
98
0
295
34
19
15
30
1.93
24868--24909
19
2.2
20
83
12
52
0
14
7
78
0.95
24872--24922
16
3.2
15
83
10
57
0
11
7
80
0.90
27152--27441
89
3.3
89
95
0
517
25
25
17
32
1.97
27584--27660
40
1.9
40
89
5
120
46
16
5
31
1.69
28548--28598
16
3.2
16
83
10
77
29
5
58
5
1.45
28898--29140
125
1.9
125
94
0
423
32
19
18
29
1.95
29407--29466
22
2.7
22
94
0
102
35
23
20
21
1.96

Tables:   1

The End!