Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013899.1 Corchorus olitorius cultivar O-4 contig13932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38563

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6278--6341
3
21.7
3
96
3
121
65
0
0
34
0.93
6534--6759
116
1.9
116
96
0
416
43
12
10
33
1.76
9266--9311
22
2.1
22
100
0
92
32
4
28
34
1.77
9269--9322
22
2.5
22
90
0
72
29
5
25
38
1.79
9386--9419
18
1.9
18
88
5
52
50
2
0
47
1.16
10694--10758
31
2.1
31
97
0
121
23
21
12
43
1.86
11102--11237
68
2.0
68
85
2
184
29
8
22
38
1.84
17528--17552
13
1.9
13
100
0
50
56
0
0
44
0.99
23556--23601
21
2.2
21
92
3
76
34
4
2
58
1.30
23556--23610
21
2.7
21
85
2
58
30
3
7
58
1.43
23364--23636
135
2.0
134
80
8
304
34
10
7
46
1.68
23753--23787
16
2.2
16
90
5
54
48
8
14
28
1.73
26098--26131
2
17.0
2
100
0
68
50
0
0
50
1.00
32957--33031
28
2.7
28
87
2
98
42
26
13
17
1.86
34288--34357
25
2.7
27
84
6
99
12
22
27
37
1.91
35468--35514
21
2.2
21
85
7
60
53
12
21
12
1.72
38240--38563
47
6.9
47
96
1
589
49
4
16
29
1.67

Tables:   1

The End!