Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001390.1 Corchorus olitorius cultivar O-4 contig01390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1657
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30


Found at i:679 original size:13 final size:13

Alignment explanation


    Indices: 658--694  Score: 56
    Period size: 13  Copynumber: 2.8  Consensus size: 13

        648 GATAATTCTT

                         
        658 TTTGACCCTCCAA
          1 TTTGACCCTCCAA

                *        
        671 TTTGTCCCTCCAA
          1 TTTGACCCTCCAA

            *          
        684 CTTGACCCTCC
          1 TTTGACCCTCC

        695 TAATAATTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.16, C:0.43, G:0.08, T:0.32


Consensus pattern (13 bp):   
TTTGACCCTCCAA

Found at i:755 original size:40 final size:40

Alignment explanation


    Indices: 693--772  Score: 133
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        683 ACTTGACCCT

                             *                      
        693 CCTAATAATTAAGGAAATAAATTAAATCCAGATTTAGCCC
          1 CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCC

                          *                *        
        733 CCTAATAATTAAGGTAAGAAATTAAATCCAGGTTTAGCCC
          1 CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCC

        773 TTAGTTATAA


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
  40   37  1.00

ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28


Consensus pattern (40 bp):   
CCTAATAATTAAGGAAAGAAATTAAATCCAGATTTAGCCC
Done.