Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013902.1 Corchorus olitorius cultivar O-4 contig13935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2094
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Found at i:2055 original size:14 final size:13

Alignment explanation


    Indices: 2038--2076  Score: 51
    Period size: 14  Copynumber: 2.9  Consensus size: 13

       2028 AGAAAACAAA

                *        
       2038 TTTTCATTTCTCT
          1 TTTTTATTTCTCT

                      *   
       2051 TTTTTAATTTATCT
          1 TTTTT-ATTTCTCT

                        
       2065 TTTTTATTTCTC
          1 TTTTTATTTCTC

       2077 ATGACAAATT


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  13   10  0.45
  14   12  0.55

ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72


Consensus pattern (13 bp):   
TTTTTATTTCTCT
Done.