Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013905.1 Corchorus olitorius cultivar O-4 contig13938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2041
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:116 original size:2 final size:2

Alignment explanation


    Indices: 102--140  Score: 62
    Period size: 2  Copynumber: 19.5  Consensus size: 2

         92 CTAGATACTT

                                                                       
        102 TA TA TA TCA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        141 TTGTTGCGCC


Statistics
Matches: 35,  Mismatches: 0, Indels: 4
        0.90            0.00        0.10

Matches are distributed among these distances:
   1    1  0.03
   2   33  0.94
   3    1  0.03

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.