Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013907.1 Corchorus olitorius cultivar O-4 contig13940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9130
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:8145 original size:14 final size:14

Alignment explanation


    Indices: 8126--8165  Score: 53
    Period size: 14  Copynumber: 2.8  Consensus size: 14

       8116 TGAGAGTTTT

                          
       8126 AATAATAATTATTC
          1 AATAATAATTATTC

                  *      *
       8140 AATAATTATTATTT
          1 AATAATAATTATTC

                        
       8154 AATTAATAATTA
          1 AA-TAATAATTA

       8166 ATTAATTTCA


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  14   14  0.64
  15    8  0.36

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (14 bp):   
AATAATAATTATTC
Done.