Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013908.1 Corchorus olitorius cultivar O-4 contig13941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5591
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27


Found at i:2858 original size:4 final size:4

Alignment explanation


    Indices: 2851--2876  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

       2841 TTTCATTCAC

                                            
       2851 TTAT TTAT TTAT TTAT TTAT TTAT TT
          1 TTAT TTAT TTAT TTAT TTAT TTAT TT

       2877 TCCTTTGGTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTAT

Done.